Croote, D., Quake, S.R. Food allergen detection by mass spectrometry: the role of systems biology. npj Syst Biol Appl. 2016 Sep 29; 2:16022.
North sea shrimp Protein: Cra c 5 | Myosin, Light Chain 1
Empirical Proteotypic Peptide Explorer:
This rose plot enables visualization of proteotypic peptides. Each colored rose petal corresponds to a peptide and is bounded by thin gray petals, which represent tryptic cut sites. The radial magnitude of each peptide corresponds to the number of publications which report it.
Hover over a rose petal with your mouse to see the peptide. Click on a rose petal to see the species specificity of that peptide and add it to your cart.
Sequence - 153 amino acids
MAADLSARDVERVKFAFSIYDFEGNGQIDAFYIGDCLRALNLNPTLALIAKLGGTEKRKEKMIKLDDFMPLFAQVKKDKDAGSYEDFIEVLKLYDKAENGTMMYAELEHILLSLGERLDKAELEPILRECCPPEDDEGLIPFEPFVKKLTQLL
UniProt: D7F1Q1 IUIS: Cra c 5Peptide Selector Tool
Explore peptide targets for mass spectrometry by adjusting the selection criteria below. Results from empirical and computational prediction tools have been aggregated for convenience.
Minimum length:
Maximum length:
| 1 | Peptide | 2 | Exp.3 | ESP4 | CONSeQ5 |
|---|---|---|---|---|---|
| ^ | MAADLSAR | D | 0 | 0.24 | 0.5266 |
| K | FAFSIYDFEGNGQIDAFYIGDCLR | A | 0 | 0.303 | 0.0339 |
| R | ALNLNPTLALIAK | L | 0 | 0.692 | 0.55154 |
| K | LDDFMPLFAQVK | K | 0 | 0.614 | 0.30572 |
| K | DAGSYEDFIEVLK | L | 0 | 0.63 | 0.54124 |
| K | AENGTMMYAELEHILLSLGER | L | 0 | 0.525 | 0.0641 |
| K | AELEPILR | E | 0 | 0.362 | 0.70806 |
| R | ECCPPEDDEGLIPFEPFVK | K | 0 | 0.671 | 0.32578 |
1 Previous amino acid (^ = Start of protein)
2 Next amino acid ($ = End of protein)
3 Exp. = Number of publications in which this peptide has been reported experimentally
4 ESP = ESP Predictor. Fusaro VA, et al. Nat Botechnol 2009; 27(2): 190-198. doi
5 CONSeQ = CONSeQuence. Eyers CE, et al. Mol Cell Proteomics 2011; 10(11). doi
Underline: Peptide occurs within the first 20 amino acids from the start of the protein. Use caution as the protein may contain a cleaved signaling sequence.
Strike-through: Peptide is present in a protein from another allergen species and is thus nonspecific.